Legionella is water borne in almost all natural sources I.e ponds, lakes, rivers etc so it is a big possibility on an indirect system if the flood water has reached the cold water tanks etc. A hot water system can be pasteurised for 1 hour at 70 degrees, and run taps and showers, be careful when running showers to ensure no water is inhaled as this is how legionella can be caught,however this will not kill any bacteria within the cold water system, this should be drained, refilled and disinfected/chlorinated. Of course they may also be other bacteria besides legionella.